Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0437PFAM: protein of unknown function DUF374; KEGG: mlo:mlr8268 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Meso_0438
Three-deoxy-D-manno-octulosonic-acid transferase-like protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
     0.972
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.883
Meso_0436
KEGG: sme:SMc00895 hypothetical protein.
       0.660
Meso_1392
PFAM: protein of unknown function DUF1009; KEGG: mlo:mll0631 hypothetical protein.
 
     0.655
Meso_0435
PFAM: inositol monophosphatase; KEGG: bme:BMEII1032 myo-inositol-1(or 4)-monophosphatase.
 
     0.563
Meso_3173
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bmb:BruAb1_1684 TonB system transport protein, ExbD/TolR family; TC 2.C.1.2.1.
  
     0.540
Meso_0434
Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mlo:mlr8264 pmbA protein, maturation of antibiotic MccB17.
       0.497
Meso_1315
PFAM: lipid A biosynthesis acyltransferase; KEGG: mlo:mlr1179 lipid A biosynthesis lauroyl acyltransferase.
 
     0.484
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
     0.480
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.473
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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