Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0440KEGG: mlo:msl8272 hypothetical protein. (75 aa)    
Predicted Functional Partners:
Meso_2210
PFAM: Uncharacterised conserved protein UCP033924; KEGG: mlo:mll2811 hypothetical protein.
  
   
 0.766
Meso_2216
PFAM: protein of unknown function DUF1153; KEGG: mlo:msl2821 hypothetical protein.
  
     0.745
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
   
 0.741
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.740
Meso_3255
PFAM: protein of unknown function DUF1036; KEGG: bmb:BruAb1_1734 hypothetical protein.
  
     0.735
Meso_0882
PFAM: protein of unknown function DUF1214; KEGG: mlo:mll7656 hypothetical protein.
  
     0.722
Meso_2211
KEGG: mlo:mlr2813 hypothetical protein.
  
     0.719
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.715
Meso_0962
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll7793 hypothetical protein.
  
     0.711
Meso_3180
PFAM: protein of unknown function DUF1465; KEGG: mlo:mll3903 hypothetical protein.
  
     0.709
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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