Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0480PFAM: putative cyclase; KEGG: bur:Bcep18194_C7460 putative cyclase. (261 aa)    
Predicted Functional Partners:
Meso_0481
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase.
       0.773
Meso_0174
PFAM: protein of unknown function DUF849; KEGG: sme:SMb20275 hypothetical protein.
  
  
 0.723
Meso_0482
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: gme:Gmet_1533 fumarate reductase/succinate dehydrogenase flavoprotein-like.
       0.668
Meso_0483
PFAM: regulatory protein, TetR; KEGG: jan:Jann_2034 transcriptional regulator, TetR family.
 
     0.565
Meso_0479
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB1151 putative branched-chain amino acid-binding protein; TC 3.A.1.4.-.
 
     0.428
Meso_3537
PFAM: Cupin 2, conserved barrel; KEGG: bja:bll6423 hypothetical protein.
 
   
 0.411
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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