Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0491PFAM: ABC-2 type transporter; KEGG: cef:CE0178 putative O-antigen export system permease protein. (261 aa)    
Predicted Functional Partners:
Meso_0490
PFAM: ABC transporter related; SMART: ATPase; KEGG: cjk:jk2037 ABC-type polysaccharide/polyol phosphate transport system ATPase component.
 
 0.989
Meso_3694
PFAM: ABC transporter related; SMART: ATPase; KEGG: pst:PSPTO1075 O-antigen ABC transporter, ATP-binding protein, putative.
 
 0.977
Meso_3693
PFAM: ABC-2 type transporter; KEGG: neu:NE0472 ABC 2 transport system integral membrane protein.
     
  0.900
Meso_2758
PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20832 putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein.
 
 0.886
Meso_1540
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein.
  
  
  0.788
Meso_1115
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1.
    
  0.765
Meso_1757
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7866 hypothetical protein.
    
  0.764
Meso_1114
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein.
     
  0.759
Meso_1758
PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7865 hypothetical protein.
     
  0.759
Meso_3668
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3197 ABC transporter ATP-binding protein (in RpoN upstream).
     
  0.759
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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