Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0497Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: nwi:Nwi_2141 prophage CP4-57 regulatory. (91 aa)    
Predicted Functional Partners:
Meso_0496
PFAM: phage integrase; KEGG: mlo:mlr6952 CP4-like integrase; Belongs to the 'phage' integrase family.
 
  
 0.811
Meso_0554
KEGG: mlo:mlr6952 CP4-like integrase.
 
  
 0.811
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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