Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Meso_0499 | Meso_0500 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | 0.937 |
Meso_0499 | Meso_0501 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein. | 0.929 |
Meso_0499 | Meso_0502 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: Conjugal transfer protein; KEGG: mlo:mll9605 conjugal transfer protein trbF. | 0.937 |
Meso_0499 | Meso_0503 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mll9606 conjugal transfer protein trbL. | 0.944 |
Meso_0499 | Meso_0504 | KEGG: mlo:msl9602 hypothetical protein. | KEGG: nar:Saro_0313 hypothetical protein. | 0.860 |
Meso_0499 | Meso_0505 | KEGG: mlo:msl9602 hypothetical protein. | KEGG: mlo:mll9607 conjugal transfer protein trbJ. | 0.941 |
Meso_0499 | Meso_0506 | KEGG: mlo:msl9602 hypothetical protein. | ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE. | 0.886 |
Meso_0499 | Meso_0507 | KEGG: mlo:msl9602 hypothetical protein. | KEGG: mlo:mll9611 conjugal transfer protein trbB. | 0.916 |
Meso_0499 | Meso_0508 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC. | 0.867 |
Meso_0499 | Meso_0509 | KEGG: mlo:msl9602 hypothetical protein. | PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB. | 0.805 |
Meso_0500 | Meso_0499 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | KEGG: mlo:msl9602 hypothetical protein. | 0.937 |
Meso_0500 | Meso_0501 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein. | 0.989 |
Meso_0500 | Meso_0502 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | PFAM: Conjugal transfer protein; KEGG: mlo:mll9605 conjugal transfer protein trbF. | 0.949 |
Meso_0500 | Meso_0503 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mll9606 conjugal transfer protein trbL. | 0.950 |
Meso_0500 | Meso_0504 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | KEGG: nar:Saro_0313 hypothetical protein. | 0.924 |
Meso_0500 | Meso_0505 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | KEGG: mlo:mll9607 conjugal transfer protein trbJ. | 0.948 |
Meso_0500 | Meso_0506 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE. | 0.974 |
Meso_0500 | Meso_0507 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | KEGG: mlo:mll9611 conjugal transfer protein trbB. | 0.937 |
Meso_0500 | Meso_0508 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC. | 0.935 |
Meso_0500 | Meso_0509 | PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI. | PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB. | 0.850 |
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