Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0509PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB. (329 aa)    
Predicted Functional Partners:
Meso_0506
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
 
   
 0.930
Meso_0508
PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC.
 
   
 0.919
Meso_0507
KEGG: mlo:mll9611 conjugal transfer protein trbB.
 
   
 0.911
Meso_0502
PFAM: Conjugal transfer protein; KEGG: mlo:mll9605 conjugal transfer protein trbF.
 
   
 0.864
Meso_0501
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
 
   
 0.857
Meso_0500
PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI.
 
   
 0.850
Meso_0505
KEGG: mlo:mll9607 conjugal transfer protein trbJ.
 
   
 0.846
Meso_0603
PFAM: type II secretion system protein; KEGG: sme:SMa1564 hypothetical protein.
 
  
 0.845
Meso_0503
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mll9606 conjugal transfer protein trbL.
 
   
 0.839
Meso_4001
PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein.
 
  
 0.838
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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