Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_0510Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: nwi:Nwi_0830 transcriptional regulator, XRE family. (89 aa)    
Predicted Functional Partners:
Meso_0511
PFAM: HipA-like-like; KEGG: neu:NE1310 possible HipA protein.
 
  
 0.964
Meso_0509
PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB.
  
    0.431
Meso_0505
KEGG: mlo:mll9607 conjugal transfer protein trbJ.
       0.429
Meso_0506
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
       0.429
Meso_0507
KEGG: mlo:mll9611 conjugal transfer protein trbB.
       0.429
Meso_0508
PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC.
       0.429
Meso_0499
KEGG: mlo:msl9602 hypothetical protein.
       0.426
Meso_0500
PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI.
       0.426
Meso_0501
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein.
       0.426
Meso_0502
PFAM: Conjugal transfer protein; KEGG: mlo:mll9605 conjugal transfer protein trbF.
       0.426
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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