Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0515PFAM: TRAG protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein. (662 aa)    
Predicted Functional Partners:
Meso_0514
KEGG: rru:Rru_A0811 helix-turn-helix protein, CopG.
 
     0.939
Meso_0516
KEGG: rru:Rru_A0816 hypothetical protein.
 
   
 0.915
Meso_2327
PFAM: TRAG protein; KEGG: rpa:RPA4132 plasmid transfer factor, traG.
  
  
 
0.901
Meso_3849
PFAM: TRAG protein; KEGG: mlo:mlr9747 plasmid transfer factor, traG protein.
  
  
 
0.900
Meso_0519
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: bja:bll0047 conjugal transfer protein precursor.
 
     0.797
Meso_3854
ATPase; SMART: ATPase; KEGG: bja:bll8285 probable conjugal transfer protein.
 
  
 0.795
Meso_0506
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
 
  
 0.792
Meso_2321
ATPase; SMART: ATPase; KEGG: mlo:mll9608 conjugal transfer protein trbE.
 
  
 0.792
Meso_3852
PFAM: Conjugal transfer protein TrbC; KEGG: nar:Saro_0317 conjugal transfer protein TrbC.
 
   
 0.739
Meso_3850
KEGG: rru:Rru_A0811 helix-turn-helix protein, CopG.
 
     0.738
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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