Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0527KEGG: nwi:Nwi_0844 hypothetical protein. (88 aa)    
Predicted Functional Partners:
Meso_0525
KEGG: mlo:mlr9734 hypothetical protein.
 
   
 0.880
Meso_0520
KEGG: bja:bll0048 hypothetical protein.
 
     0.831
Meso_0524
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: mlo:msr9739 hypothetical protein.
 
     0.831
Meso_0518
PFAM: protein of unknown function DUF736; KEGG: bja:bll0046 hypothetical protein.
 
     0.815
Meso_0519
Conjugation peptidase TraF. Serine peptidase. MEROPS family S26C; KEGG: bja:bll0047 conjugal transfer protein precursor.
 
     0.811
Meso_0528
KEGG: rru:Rru_A0163 transcriptional regulator, XRE family.
 
     0.797
Meso_0529
PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein.
 
     0.782
Meso_3838
KEGG: mlo:mlr9734 hypothetical protein.
 
   
 0.763
Meso_2334
KEGG: bja:bll0048 hypothetical protein.
 
     0.758
Meso_3843
KEGG: bja:bll0048 hypothetical protein.
 
     0.751
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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