Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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[Homology]
Score
Meso_0539PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC. (322 aa)    
Predicted Functional Partners:
Meso_3815
KEGG: nwi:Nwi_2122 hypothetical protein.
     0.763
Meso_0535
KEGG: mlo:mlr9704 probably methylase/helicase.
     0.583
Meso_0538
TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: bja:blr1932 hypothetical protein.
 
     0.569
Meso_0545
KEGG: bja:bll4632 predicted ATP-dependent endonuclease of the OLD family.
 
     0.497
Meso_3828
KEGG: nwi:Nwi_2128 probably methylase/helicase.
     0.492
Meso_0546
PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase.
 
     0.460
Meso_0540
KEGG: ret:RHE_PF00561 hypothetical protein.
       0.448
Meso_0537
KEGG: nwi:Nwi_2126 hypothetical protein.
 
     0.445
Meso_0541
PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: ecc:c5378 hypothetical protein.
       0.441
Meso_0542
KEGG: bbr:BB0909 hypothetical protein.
       0.440
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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