Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0540KEGG: ret:RHE_PF00561 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Meso_0541
PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: ecc:c5378 hypothetical protein.
       0.758
Meso_0542
KEGG: bbr:BB0909 hypothetical protein.
       0.757
Meso_0543
PFAM: DNA methylase N-4/N-6; KEGG: bbr:BB0912 type III restriction-modification system methyltransferase.
       0.741
Meso_0544
PFAM: type III restriction enzyme, res subunit; KEGG: bbr:BB0913 type III restriction enzyme.
       0.725
Meso_0545
KEGG: bja:bll4632 predicted ATP-dependent endonuclease of the OLD family.
       0.653
Meso_0546
PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase.
       0.644
Meso_0547
KEGG: nfa:pnf2190 hypothetical protein.
       0.532
Meso_0539
PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC.
       0.448
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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