Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0551Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: bja:bll1669 hypothetical protein. (106 aa)    
Predicted Functional Partners:
Meso_0552
PFAM: protein of unknown function DUF955; KEGG: bja:bll1668 hypothetical protein.
 
  
 0.957
Meso_0550
KEGG: bja:blr0072 hypothetical protein.
 
     0.884
Meso_0549
KEGG: bja:blr0073 hypothetical protein.
 
     0.865
Meso_0548
PFAM: Patatin; KEGG: reu:Reut_C6025 patatin.
 
     0.856
Meso_0553
Hypothetical protein.
       0.693
Meso_0342
Hypothetical protein.
  
     0.448
Meso_3963
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mlo:mll6778 arginase; Belongs to the arginase family.
 
   
 0.402
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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