Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0557KEGG: bmb:BruAb1_1333 DedA family protein. (232 aa)    
Predicted Functional Partners:
Meso_0558
PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156.
       0.594
Meso_0556
Hypothetical protein.
       0.548
Meso_3547
PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: cdi:DIP2166 putative ABC transport system permease protein.
 
     0.428
Meso_0559
PFAM: high-affinity nickel-transporter; KEGG: ppu:PP2968 hypothetical protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.405
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.