Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0560PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:bll1209 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (542 aa)    
Predicted Functional Partners:
Meso_0561
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1882 putative integral membrane transport protein.
  0.907
Meso_0562
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1650 binding-protein-dependent transport systems inner membrane component.
  
  0.858
Meso_0563
PFAM: extracellular solute-binding protein, family 5; KEGG: bpa:BPP2435 putative solute-binding transport protein (periplasmic).
  
  0.851
Meso_0076
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sil:SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: binding-protein-dependent transport systems inner membrane component ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase.
  
 0.728
Meso_4084
PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5494 peptide ABC transporter, periplasmic peptide-binding protein.
 
 0.613
Meso_4083
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5493 ABC transporter, solute-binding protein.
 
 0.607
Meso_1699
PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr0514 probable binding protein component of ABC transporter.
 
 0.590
Meso_4081
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5492 peptide ABC transporter, permease protein.
 
  
  0.554
Meso_0564
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mac:MA1318 argininosuccinate lyase; Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
       0.549
Meso_0565
PFAM: GCN5-related N-acetyltransferase.
       0.539
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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