Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_0575TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldo/keto reductase; KEGG: sme:SMa2157 probable oxidoreductase. (345 aa)    
Predicted Functional Partners:
Meso_0576
PFAM: protein of unknown function DUF323; KEGG: sme:SMa2159 hypothetical protein.
       0.780
Meso_0574
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein.
       0.592
Meso_0255
PFAM: PrkA serine kinase PrkA AAA; KEGG: sme:SMc01267 serine protein kinase.
   
    0.576
Meso_1529
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
   0.525
Meso_0577
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family.
       0.513
Meso_3220
Superoxide dismutase, copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 
 0.513
Meso_0976
PFAM: aldo/keto reductase; KEGG: mlo:mll3531 hypothetical protein.
 
 
 0.465
Meso_2941
PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00449 probable oxidoreductase protein.
 
 
 0.432
Meso_3240
PFAM: OsmC-like protein; KEGG: mlo:mlr4254 osmotically inducible protein C, putative ATP/GTP binding protein.
  
    0.414
Meso_3903
PFAM: aldo/keto reductase; KEGG: ecc:c0413 putative aldo/keto reductase.
 
 
 0.404
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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