Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_0583KEGG: bte:BTH_II1747 isoquinoline 1-oxidoreductase, beta subunit. (200 aa)    
Predicted Functional Partners:
Meso_1906
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: sme:SMb20403 putative oxidoreductase subunit protein.
 
 0.821
Meso_0582
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mlr1925 oxidoreductase, iron-sulphur binding subunit.
 
 0.772
Meso_0472
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: pai:PAE1936 carbon monoxide dehydrogenase small subunit, conjectural.
 
 0.742
Meso_0581
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bja:blr2218 putative xanthine dehydrogenase.
 
 0.741
Meso_0058
(2Fe-2S)-binding protein; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll1129 carbon-monoxide dehydrogenase small subunit.
 
 0.735
Meso_1907
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: sme:SMb20404 putative aldehyde dehydrogenase protein.
  
     0.717
Meso_0060
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMc03103 putative carbon monoxide dehydrogenase medium subunit transmembrane protein.
  
 0.690
Meso_0473
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ape:APE2219 292aa long hypothetical nicotine dehydrogenase chain A.
  
 0.690
Meso_1293
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis; PFAM: protein of unknown function DUF182; KEGG: mlo:mlr0092 xanthine dehydrogenase accessory factor.
 
  
 0.427
Meso_1588
KEGG: rsp:RSP_2740 putative glucose/sorbosone dehydrogenase.
  
     0.407
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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