Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_0590Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: atc:AGR_L_1109 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Meso_0594
PFAM: Sarcosine oxidase, gamma subunit; KEGG: atc:AGR_L_1101 sarcosine oxidase gamma subunit.
 
    0.891
Meso_0592
TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: atc:AGR_L_1105 sarcosine oxidase, subunit delta.
 
    0.879
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
 
     0.876
Meso_0591
TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_1106 sarcosine oxidase beta subunit.
 
     0.852
Meso_0574
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein.
  
 
 0.598
Meso_0577
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family.
  
 
 0.591
Meso_3689
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein.
  
 
 0.507
Meso_2413
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein.
  
 
 0.474
Meso_0589
PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: sme:SMb20753 putative acyl-CoA dehydrogenase protein.
       0.443
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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