Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0607PFAM: TadE-like; KEGG: sme:SMa1572 hypothetical protein. (140 aa)    
Predicted Functional Partners:
Meso_0609
KEGG: sme:SMa1576 probable CpaB2 pilus assembly protein.
  
    0.896
Meso_0608
PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein.
  
  
 0.864
Meso_0610
PFAM: peptidase A24A, prepilin type IV; KEGG: sme:SMa1578 prepilin peptidase CpaA.
  
  
 0.730
Meso_3999
KEGG: sme:SMc04109 putative response regulator protein.
  
  
 0.677
Meso_3996
KEGG: mlo:mlr5595 pilus assembly protein cpaB.
  
    0.593
Meso_0603
PFAM: type II secretion system protein; KEGG: sme:SMa1564 hypothetical protein.
  
  
 0.547
Meso_4001
PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein.
  
  
 0.547
Meso_0611
KEGG: sme:SMa1579 hypothetical protein.
  
    0.527
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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