Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_0609KEGG: sme:SMa1576 probable CpaB2 pilus assembly protein. (267 aa)    
Predicted Functional Partners:
Meso_0608
PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein.
 
  
 0.992
Meso_3999
KEGG: sme:SMc04109 putative response regulator protein.
 
  
 0.940
Meso_0610
PFAM: peptidase A24A, prepilin type IV; KEGG: sme:SMa1578 prepilin peptidase CpaA.
 
  
 0.937
Meso_0603
PFAM: type II secretion system protein; KEGG: sme:SMa1564 hypothetical protein.
 
  
 0.927
Meso_4001
PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein.
 
  
 0.927
Meso_0602
PFAM: type II secretion system protein; KEGG: sme:SMa1562 hypothetical protein.
 
  
 0.925
Meso_4002
PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein.
 
  
 0.925
Meso_3997
PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.922
Meso_0117
Flp pilus assembly protein secretin CpaC-like protein; KEGG: bpm:BURPS1710b_2040 RhcC2; Belongs to the bacterial secretin family.
 
  
 0.920
Meso_0614
PFAM: type II and III secretion system protein transport-associated; KEGG: sme:SMa0163 probable PilQ pilus assembly protein; Belongs to the bacterial secretin family.
 
  
 0.920
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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