Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0615KEGG: sme:SMa0031 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Meso_0616
Peptidase, metallopeptidase; PFAM: Hemolysin-type calcium-binding region peptidase M10A and M12B, matrixin and adamalysin peptidase, metallopeptidases; SMART: Peptidase, metallopeptidases; KEGG: sme:SMa0034 possible protease.
       0.737
Meso_0617
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mlo:mll2582 metalloprotease transporter.
       0.634
Meso_0618
KEGG: nwi:Nwi_0962 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase.
       0.584
Meso_0612
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: sme:SMa0166 hypothetical protein.
       0.438
Meso_0613
KEGG: sme:SMa0164 hypothetical protein.
       0.438
Meso_0614
PFAM: type II and III secretion system protein transport-associated; KEGG: sme:SMa0163 probable PilQ pilus assembly protein; Belongs to the bacterial secretin family.
       0.438
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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