Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0617TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mlo:mll2582 metalloprotease transporter. (432 aa)    
Predicted Functional Partners:
Meso_0618
KEGG: nwi:Nwi_0962 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase.
 
  
 0.942
Meso_1569
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate.
 
 0.920
Meso_0616
Peptidase, metallopeptidase; PFAM: Hemolysin-type calcium-binding region peptidase M10A and M12B, matrixin and adamalysin peptidase, metallopeptidases; SMART: Peptidase, metallopeptidases; KEGG: sme:SMa0034 possible protease.
 
  
 0.898
Meso_0792
Type I secretion system ATPase; KEGG: mlo:mll1027 rhizobiocin secretion protein rspD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase.
 
  
 0.808
Meso_2599
Type I secretion system ATPase; KEGG: sme:SMc03147 putative ATP-binding ABC transporter protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase.
 
  
 0.807
Meso_0793
PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein.
 
  
 0.708
Meso_0615
KEGG: sme:SMa0031 hypothetical protein.
       0.634
Meso_2867
PFAM: protein of unknown function DUF534; KEGG: bmb:BruAb1_2028 ABC transporter, periplasmic substrate-binding protein, hypothetical.
    
  0.632
Meso_3332
PFAM: acriflavin resistance protein; KEGG: mlo:mll3832 multidrug resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.469
Meso_3333
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mll3833 similar to periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.451
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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