Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0622PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family. (340 aa)    
Predicted Functional Partners:
Meso_0623
PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bja:bll2645 hypothetical protein.
 
     0.595
Meso_2413
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein.
  
 
 0.565
Meso_3689
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein.
  
 
 0.564
Meso_0624
PFAM: homocysteine S-methyltransferase; KEGG: jan:Jann_3671 homocysteine S-methyltransferase.
       0.414
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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