Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_0635PFAM: glycoside hydrolase, family 25; KEGG: sme:SMb21091 putative cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein. (334 aa)    
Predicted Functional Partners:
Meso_0636
TIGRFAM: conserved hypothetical protein; KEGG: sme:SMa0287 hypothetical protein.
       0.444
Meso_2103
PFAM: Lytic transglycosylase, catalytic; KEGG: bmb:BruAb1_0067 transglycosylase SLT domain protein.
  
    0.444
Meso_0637
TIGRFAM: putative integral membrane protein TIGR02587; KEGG: atc:AGR_L_1426 hypothetical protein.
       0.433
Meso_0634
PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: mlo:mlr4960 penicillin-binding protein; Belongs to the peptidase S11 family.
       0.426
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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