Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0636TIGRFAM: conserved hypothetical protein; KEGG: sme:SMa0287 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Meso_0637
TIGRFAM: putative integral membrane protein TIGR02587; KEGG: atc:AGR_L_1426 hypothetical protein.
 
     0.950
Meso_0638
KEGG: atc:AGR_C_1551 hypothetical protein.
       0.466
Meso_0639
KEGG: atc:AGR_C_1550 hypothetical protein.
       0.466
Meso_0635
PFAM: glycoside hydrolase, family 25; KEGG: sme:SMb21091 putative cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein.
       0.444
Meso_2911
KEGG: gvi:gll1315 hypothetical protein.
  
     0.401
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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