Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0641KEGG: bbr:BB1723 hypothetical protein. (358 aa)    
Predicted Functional Partners:
Meso_0642
PFAM: protein of unknown function DUF1111; KEGG: bbr:BB1722 hypothetical protein.
 
  
 0.986
Meso_0640
PFAM: Uncharacterised conserved protein UCP028101; KEGG: bpe:BP1558 hypothetical protein.
 
  
 0.975
Meso_0643
Imelysin. Metallo peptidase. MEROPS family M75; KEGG: bbr:BB1721 putative iron-regulated protein.
 
    0.961
Meso_0638
KEGG: atc:AGR_C_1551 hypothetical protein.
 
     0.552
Meso_0639
KEGG: atc:AGR_C_1550 hypothetical protein.
 
     0.551
Meso_0644
PFAM: protein of unknown function DUF900, hydrolase-like; KEGG: mlo:mll0159 hypothetical protein.
 
     0.535
Meso_2490
KEGG: eba:ebB188 hypothetical protein.
  
     0.418
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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