Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0646PFAM: glycosyl transferase, family 2. (339 aa)    
Predicted Functional Partners:
Meso_0645
PFAM: NUDIX hydrolase; KEGG: sme:SMb20988 hypothetical protein.
       0.752
Meso_0650
KEGG: ret:RHE_CH03215 ketal pyruvate transferase protein.
  
     0.744
Meso_0080
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: jan:Jann_2571 transcriptional regulator, LysR family.
  
     0.739
Meso_0647
PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2551 glycosyl transferase, family 2.
       0.668
Meso_2409
Hypothetical protein.
 
     0.658
Meso_0074
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein.
  
     0.653
Meso_2875
PFAM: O-antigen polymerase; KEGG: sme:SMb21505 putative membrane protein, similar to Wzy-like polysaccharide polymerase ExoQ.
 
  
 0.593
Meso_3130
PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator.
  
   
 0.588
Meso_3134
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: hma:pNG7365 serine protease.
  
     0.564
Meso_3787
KEGG: sme:SMa2299 hypothetical protein.
  
     0.562
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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