Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0650KEGG: ret:RHE_CH03215 ketal pyruvate transferase protein. (299 aa)    
Predicted Functional Partners:
Meso_0649
PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_PE00198 putative succinoglycan biosynthesis transport protein.
 
  
 0.924
Meso_0648
PFAM: glycoside hydrolase, family 16; KEGG: mlo:mlr5264 endo-1,3-1,4-beta-glycanase ExoK.
 
   
 0.846
Meso_0646
PFAM: glycosyl transferase, family 2.
  
     0.744
Meso_2875
PFAM: O-antigen polymerase; KEGG: sme:SMb21505 putative membrane protein, similar to Wzy-like polysaccharide polymerase ExoQ.
 
  
 0.657
Meso_0080
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: jan:Jann_2571 transcriptional regulator, LysR family.
  
     0.595
Meso_0656
KEGG: mlo:mlr5271 glycosyltransferase, SUCCINOGLYCAN BIOSYNTHESIS PROTEIN EXOL.
 
 
 0.520
Meso_1154
PFAM: sugar transferase; KEGG: mlo:mll8435 probable glycosyl transferase.
  
  
 0.484
Meso_2409
Hypothetical protein.
 
     0.483
Meso_1342
PFAM: TadE-like; KEGG: mlo:mll7596 hypothetical protein.
  
    0.479
Meso_0652
PFAM: polysaccharide export protein; KEGG: mlo:mll5251 exopolysaccharide production protein exoF.
 
  
 0.460
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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