Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0670KEGG: mlo:mlr5063 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Meso_3723
Hypothetical protein; KEGG: gga:424836 similar to chromosome 21 open reading frame 29; TSP-EAR.
  
     0.632
Meso_1099
PFAM: ETC complex I subunit conserved region; KEGG: sme:SMc00287 putative oxidoreductase protein.
  
     0.625
infC
Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.608
Meso_0593
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit.
  
 0.547
Meso_0669
KEGG: ret:RHE_CH00018 hypothetical protein.
       0.513
Meso_3546
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bmb:BruAb1_0238 oxidoreductase, short chain dehydrogenase/reductase family.
  
  0.494
Meso_1629
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.489
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
  0.473
Meso_1186
PFAM: heat shock protein DnaJ-like.
  
 
   0.464
Meso_1478
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: ret:RHE_CH01204 probable phosphatase protein.
  
     0.463
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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