Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0678PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll5047 hypothetical protein. (328 aa)    
Predicted Functional Partners:
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mlo:mll5053 phenylalanine-tRNA ligase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.719
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc aminoacyl tRNA synthetase, class II-like; KEGG: mlo:mll5055 phenylalanyl-tRNA synthetase, alpha-subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
       0.646
Meso_0675
Mn2+-dependent serine/threonine protein kinase; KEGG: bmb:BruAb1_2096 hypothetical protein.
       0.627
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
    0.477
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
       0.467
Meso_2854
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: jan:Jann_1945 transcriptional regulator, LacI family.
  
   
 0.435
Meso_0455
5-deoxyglucuronate isomerase; PFAM: Myo-inositol catabolism IolB region; KEGG: atc:AGR_L_719 putative myo-inositol catabolism protein.
 
  
 0.432
Meso_3703
5-dehydro-2-deoxygluconokinase; PFAM: PfkB; KEGG: plu:plu1801 unnamed protein product; similar to myo-inositol catabolism protein IolC of Bacillus subtilis; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.430
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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