Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0686PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll4550 hypothetical protein. (204 aa)    
Predicted Functional Partners:
Meso_2214
KEGG: mlo:mlr2817 hypothetical protein.
  
     0.770
Meso_1118
KEGG: sme:SMc02115 hypothetical unknown protein.
  
     0.769
Meso_0757
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: bms:BR0481 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Diverse 7TM receptor, extracellular region 2 Diverse 7TM receptor, transmembrane region PAS fold-3; SMART: PAC motif.
 
 
 
 0.768
Meso_0740
PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein.
  
     0.757
Meso_0962
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll7793 hypothetical protein.
  
     0.754
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.734
Meso_2741
PFAM: protein of unknown function DUF459; KEGG: mlo:mlr3028 hypothetical protein.
  
     0.722
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.719
Meso_3078
KEGG: bms:BR2016 hypothetical protein.
  
     0.719
Meso_3255
PFAM: protein of unknown function DUF1036; KEGG: bmb:BruAb1_1734 hypothetical protein.
  
     0.710
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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