Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0709PFAM: methyltransferase small; KEGG: bme:BMEI1534 methyltransferase; Belongs to the methyltransferase superfamily. (286 aa)    
Predicted Functional Partners:
Meso_0710
KEGG: sme:SMc00859 hypothetical/unknown protein.
       0.838
Meso_0708
PFAM: peptidase S49; KEGG: mlo:mll7424 probable proteinase.
       0.626
Meso_0711
PFAM: Polyprenyl synthetase; KEGG: mlo:mlr7426 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.610
Meso_0707
KEGG: mlo:msl7423 hypothetical protein.
       0.533
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
 
     0.531
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.512
Meso_0705
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
       0.511
Meso_0423
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bmb:BruAb2_0194 hydrolase, haloacid dehalogenase-like family.
 
     0.477
rimP
Protein of unknown function DUF150; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
    0.465
rsmI
Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.454
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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