Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_0710KEGG: sme:SMc00859 hypothetical/unknown protein. (74 aa)    
Predicted Functional Partners:
Meso_0709
PFAM: methyltransferase small; KEGG: bme:BMEI1534 methyltransferase; Belongs to the methyltransferase superfamily.
       0.838
Meso_0708
PFAM: peptidase S49; KEGG: mlo:mll7424 probable proteinase.
 
     0.717
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
 
     0.628
Meso_0711
PFAM: Polyprenyl synthetase; KEGG: mlo:mlr7426 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.613
Meso_2181
TIGRFAM: conserved hypothetical membrane protein; KEGG: mlo:mlr2734 hypothetical protein.
  
     0.572
Meso_1368
PFAM: Uncharacterised conserved protein UCP032025; KEGG: mlo:mll0669 hypothetical protein.
  
     0.548
Meso_2182
PFAM: protein of unknown function DUF1355; KEGG: mlo:mlr2735 hypothetical protein.
  
     0.537
Meso_0707
KEGG: mlo:msl7423 hypothetical protein.
       0.536
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.512
Meso_0705
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
       0.511
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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