Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0800PFAM: regulatory protein, LuxR; KEGG: bur:Bcep18194_B1172 transcriptional regulator, LuxR family. (296 aa)    
Predicted Functional Partners:
Meso_0799
PFAM: polysaccharide deacetylase; KEGG: son:SO4151 polysaccharide deacetylase family protein.
     
 0.623
Meso_0798
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bbr:BB0351 LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.442
Meso_0797
PFAM: response regulator receiver; KEGG: ret:RHE_CH01734 probable two-component response regulator protein.
  
 
 0.403
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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