STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0801PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bur:Bcep18194_A5914 thiamine pyrophosphate-requiring enzyme (putative benzoylformatedecarboxylase); Belongs to the TPP enzyme family. (594 aa)    
Predicted Functional Partners:
Meso_1489
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT; KEGG: mlo:mll1432 acetolactate synthase small subunit.
 
 0.856
Meso_2923
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: ypm:pMT054 putative periplasmic protein.
  
    0.681
Meso_0812
KEGG: bpa:BPP0387 4,5-dihydroxyphthalate decarboxylase.
  
     0.678
Meso_2662
KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase.
  
     0.676
Meso_3748
Hypothetical protein; KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase.
  
     0.673
Meso_2921
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: ypm:pMT054 putative periplasmic protein.
  
     0.620
ilvC
Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.
 
  
 0.616
Meso_0925
KEGG: ret:RHE_PE00163 hypothetical protein.
  
  
  0.597
Meso_0802
KEGG: bbr:BB3568 putative decarboxylase.
 
     0.540
Meso_1055
KEGG: eba:p2A115 hypothetical protein, potential permease subunit.
  
     0.534
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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