Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0802KEGG: bbr:BB3568 putative decarboxylase. (170 aa)    
Predicted Functional Partners:
Meso_0803
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bbr:BB3569 hypothetical protein.
 
     0.942
Meso_0805
PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B1956 hypothetical protein.
 
     0.792
Meso_1052
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:blr2858 probable sulfopyruvate decarboxylase.
 
     0.762
Meso_1051
KEGG: bja:bll6809 hypothetical protein.
  
     0.759
Meso_0804
PFAM: aldehyde dehydrogenase; KEGG: pfo:Pfl_3233 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.756
Meso_1069
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:bll3171 hypothetical protein.
 
     0.734
Meso_0806
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: mlo:mll6979 ABC transporter, periplasmic substrate-binding protein.
 
    0.548
Meso_0801
PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bur:Bcep18194_A5914 thiamine pyrophosphate-requiring enzyme (putative benzoylformatedecarboxylase); Belongs to the TPP enzyme family.
 
     0.540
Meso_2923
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: ypm:pMT054 putative periplasmic protein.
  
    0.512
Meso_2921
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: ypm:pMT054 putative periplasmic protein.
  
    0.494
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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