Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_0805PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B1956 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Meso_3622
PFAM: fumarate lyase; KEGG: bja:bll7942 probable 3-carboxy-cis,cis-muconate cycloisomerase.
  
  
  0.912
Meso_2049
TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: sme:SMb20578 putative gamma carboxymuconolactone decarboxylase protein.
    
 0.906
Meso_2527
PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PF00193 gamma-carboxymuconolactone decarboxylase protein.
    
 0.906
Meso_2960
PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB4071 4-carboxymuconolactone decarboxylase.
    
 0.906
Meso_3910
PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll4600 4-carboxymuconolactone decarboxylase, putative.
    
 0.906
Meso_0446
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold Ndr; KEGG: sme:SMb20579 putative beta-ketoadipate enol-lactone hydrolase protein.
   
 
 0.903
Meso_2052
TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; KEGG: mlo:mlr7211 3-carboxy-cis,cis-muconate cycloisomerase.
     
  0.900
Meso_0802
KEGG: bbr:BB3568 putative decarboxylase.
 
     0.792
Meso_0804
PFAM: aldehyde dehydrogenase; KEGG: pfo:Pfl_3233 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.773
Meso_0803
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bbr:BB3569 hypothetical protein.
       0.746
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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