Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0822PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pae:PA3507 short chain dehydrogenase. (262 aa)    
Predicted Functional Partners:
Meso_0821
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6304 oxidoreductase.
 
    0.943
Meso_0823
PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: thiamine pyrophosphate-requiring enzyme; Belongs to the TPP enzyme family.
 
 
  0.939
Meso_0820
PFAM: alpha/beta hydrolase fold; KEGG: bte:BTH_II1498 hydrolase, alpha/beta fold family.
 
  0.935
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
    0.904
Meso_0819
PFAM: Cupin 2, conserved barrel; KEGG: aci:ACIAD0993 hypothetical protein.
 
     0.892
Meso_0825
PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II1493 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
 
   0.840
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 0.760
Meso_0815
KEGG: pae:PA3513 putative sulfonate transport system substrate-binding protein.
 
     0.713
Meso_2965
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6315 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.711
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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