Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_0860TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mlo:mll7634 2-haloacid halidohydrolase Iva. (220 aa)    
Predicted Functional Partners:
Meso_0313
PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_75 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Meso_0764
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: atc:AGR_C_1458 conserved hypothetical protein VC1645.
     
  0.900
Meso_0804
PFAM: aldehyde dehydrogenase; KEGG: pfo:Pfl_3233 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
     
  0.900
Meso_0466
TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: mlo:mll6943 aquaporin, nodulin-like intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.489
Meso_0859
PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein.
       0.463
Meso_0861
Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.450
Meso_1700
PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein.
 
    0.403
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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