Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0929Hypothetical protein. (239 aa)    
Predicted Functional Partners:
Meso_0928
Hypothetical protein.
       0.773
Meso_3523
PFAM: Allergen V5/Tpx-1 related; KEGG: tel:tll1411 hypothetical protein.
  
 
  0.750
Meso_0912
PFAM: lipolytic enzyme, G-D-S-L; KEGG: cac:CAC0537 acetylxylan esterase, acyl-CoA esterase or GDSL lipase family, strong similarity to C-terminal region of endoglucanase E precursor.
  
 
 0.717
Meso_1627
PFAM: lipolytic enzyme, G-D-S-L; KEGG: sme:SMc01033 probable arylesterase protein.
  
 
 0.717
Meso_3350
PFAM: lipolytic enzyme, G-D-S-L; KEGG: mlo:mlr4347 acyl-CoA thioesterase.
  
 
 0.717
Meso_0930
PFAM: carboxyl transferase; KEGG: mlo:mll7731 3-methylcrotonyl-CoA carboxylase, beta subunit.
       0.545
Meso_0927
Hypothetical protein.
       0.536
Meso_2102
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin Autotransporter beta-domain; KEGG: psb:Psyr_3733 outer membrane autotransporter barrel.
  
  
 0.530
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
     
 0.460
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.459
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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