Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0935TIGRFAM: conserved hypothetical protein; KEGG: bur:Bcep18194_B2349 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Meso_0936
PFAM: Lytic transglycosylase, catalytic; KEGG: bba:Bd0314 hypothetical protein.
  
  
 0.778
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
 
 
 
 0.762
Meso_3451
TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; KEGG: mlo:mll4000 carboxyl-terminal protease; Belongs to the peptidase S41A family.
    
 
 0.648
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.505
Meso_1235
Hypothetical protein.
  
    0.429
Meso_0786
KEGG: atc:AGR_L_563 hypothetical protein.
  
     0.421
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
   
 
 0.403
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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