rnc protein (Chelativorans sp. BNC1) - STRING interaction network

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rnc

RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (238 aa)

Predicted Functional Partners:

Meso_0949

0.939

era

0.912

rplS

0.903

Meso_4043

0.900

rplT

0.884

rpmF

0.880

rplL

0.878

rpsB

0.877

rpsI

0.875

rplQ

0.875

Your Current Organism:

Chelativorans sp. BNC1

NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Meso_0949	era	Meso_0949	Meso_0951	Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.859
Meso_0949	rnc	Meso_0949	Meso_0950	Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.939
Meso_0949	rpmF	Meso_0949	Meso_3426	Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ret:RHE_CH04015 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.536
Meso_4043	rnc	Meso_4043	Meso_0950	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.900
Meso_4043	rplS	Meso_4043	Meso_3445	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.652
Meso_4043	rpmF	Meso_4043	Meso_3426	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ret:RHE_CH04015 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.401
Meso_4043	rpsB	Meso_4043	Meso_1381	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.923
Meso_4043	rpsI	Meso_4043	Meso_1163	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.656
era	Meso_0949	Meso_0951	Meso_0949	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.	0.859
era	rnc	Meso_0951	Meso_0950	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.912
era	rplT	Meso_0951	Meso_0674	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.447
era	rpsB	Meso_0951	Meso_1381	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.730
era	rpsI	Meso_0951	Meso_1163	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.842
rnc	Meso_0949	Meso_0950	Meso_0949	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.	0.939
rnc	Meso_4043	Meso_0950	Meso_4043	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase.	0.900
rnc	era	Meso_0950	Meso_0951	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.912
rnc	rplL	Meso_0950	Meso_1820	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.878
rnc	rplQ	Meso_0950	Meso_1653	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	PFAM: ribosomal protein L17; KEGG: ret:RHE_CH01700 50S ribosomal protein L17.	0.875
rnc	rplS	Meso_0950	Meso_3445	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.903
rnc	rplT	Meso_0950	Meso_0674	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.884

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