Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (248 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
  
 0.929
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
 
 
 0.910
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.864
Meso_0949
Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.858
Meso_3920
PFAM: PhoH-like protein KH, type 1; KEGG: mlo:mlr5535 phosphate starvation-induced protein phoH.
  
  
 0.814
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
 
 
 0.792
Meso_1755
PFAM: DNA polymerase III chi subunit, HolC; KEGG: mlo:mlr7869 putative DNA polymerase III chi subunit.
 
     0.730
Meso_1982
PFAM: protein of unknown function DUF1321; KEGG: mlo:mlr1474 hypothetical protein.
  
     0.708
Meso_3414
PFAM: protein of unknown function DUF1013; KEGG: bmb:BruAb1_1722 hypothetical protein.
  
     0.708
Meso_3984
PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D.
 
   
 0.689
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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