Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0963PFAM: NUDIX hydrolase; KEGG: mlo:mll7794 mutator MutT protein. (139 aa)    
Predicted Functional Partners:
Meso_0962
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll7793 hypothetical protein.
       0.780
Meso_1179
PFAM: NUDIX hydrolase; KEGG: hch:HCH_06993 ADP-ribose pyrophosphatase.
 
   
 0.710
Meso_0964
PFAM: protein of unknown function DUF159; KEGG: atc:AGR_C_1954 hypothetical protein; Belongs to the SOS response-associated peptidase family.
       0.587
Meso_0961
KEGG: mlo:mll7792 hypothetical protein.
       0.547
Meso_0960
KEGG: mlo:mll7791 hypothetical protein.
       0.444
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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