Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_0967PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr7800 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Meso_0968
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: mlo:mlr7801 hypothetical protein.
 
     0.816
Meso_0966
PFAM: protein of unknown function DUF559; KEGG: ret:RHE_CH01424 hypothetical protein.
       0.780
Meso_0970
TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr7806 RarD protein, chloamphenicol sensitive.
 
     0.598
Meso_0969
TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: mlo:mlr7805 homocitrate synthase nifV candidate; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
 0.554
nuoI
NADH dehydrogenase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.525
cysS
TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; KEGG: mlo:mlr7799 cysteine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.511
Meso_2828
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mlo:mll5129 hypothetical protein.
  
  
 0.425
Meso_3070
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: atc:AGR_C_4363 hypothetical protein.
  
     0.424
Meso_2547
PFAM: glutathione S-transferase-like; KEGG: bmb:BruAb1_1487 glutathione S-transferase family protein.
  
  
 0.415
Meso_1327
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_03320 hypothetical protein.
  
     0.408
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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