Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_0974PFAM: regulatory protein, ArsR; KEGG: mlo:mlr7816 transcriptional regulator. (116 aa)    
Predicted Functional Partners:
Meso_0975
PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: bms:BR0442 ABC transporter, ATP-binding/permease protein.
       0.806
Meso_0976
PFAM: aldo/keto reductase; KEGG: mlo:mll3531 hypothetical protein.
       0.547
Meso_0973
KEGG: mlo:mll1459 hypothetical protein.
       0.490
Meso_0323
PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3.
 
  
 0.412
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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