Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_1014KEGG: atc:AGR_C_3197 hypothetical protein. (380 aa)    
Predicted Functional Partners:
Meso_3998
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD.
  
     0.764
Meso_4097
PFAM: TadE-like; KEGG: bja:blr3942 hypothetical protein.
  
     0.758
Meso_3954
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mll5605 hypothetical protein.
  
     0.753
Meso_3450
PFAM: protein of unknown function DUF610, YibQ; KEGG: mlo:mll3999 hypothetical protein.
  
     0.751
Meso_1725
PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein.
  
     0.747
Meso_4094
PFAM: peptidase A24A, prepilin type IV; KEGG: mlo:mlr5594 prepilin peptidase CpaA.
  
     0.746
Meso_4098
KEGG: mlo:mll5590 hypothetical protein.
  
     0.737
Meso_3180
PFAM: protein of unknown function DUF1465; KEGG: mlo:mll3903 hypothetical protein.
  
     0.728
Meso_4096
KEGG: mlo:mll5591 hypothetical protein.
  
     0.728
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.724
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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