Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1047PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein. (316 aa)    
Predicted Functional Partners:
Meso_1067
PFAM: protein of unknown function DUF112, transmembrane; KEGG: sme:SMc00500 putative tricarboxylic transport membrane protein.
 
    0.832
Meso_2397
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3409 TRAP-T family transporter, large (12 TMs) inner membrane subunit.
 
    0.832
Meso_1844
PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpb:RPB_4417 protein of unknown function DUF112, transmembrane.
 
    0.831
Meso_3049
PFAM: protein of unknown function DUF112, transmembrane; KEGG: oih:OB2838 putative tricarboxylic transport membrane protein.
 
    0.831
Meso_3966
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll3049 hypothetical protein.
 
    0.831
Meso_0415
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB2469 probable membrane protein.
 
    0.830
Meso_2387
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
 
    0.830
Meso_2918
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein.
 
    0.830
Meso_3299
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB4222 hypothetical protein.
 
    0.830
Meso_3290
PFAM: protein of unknown function DUF112, transmembrane; KEGG: atc:AGR_C_184 hypothetical protein.
 
    0.829
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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