Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1050PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein. (318 aa)    
Predicted Functional Partners:
Meso_1049
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
       0.746
Meso_1048
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: bba:Bd2841 hypothetical protein.
       0.731
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
    0.664
Meso_1052
PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:blr2858 probable sulfopyruvate decarboxylase.
 
     0.600
Meso_1051
KEGG: bja:bll6809 hypothetical protein.
 
     0.592
Meso_1905
PFAM: cytochrome c, class I; KEGG: sme:SMb20402 putative alcohol dehydrogenase cytochrome c subunit precursor protein.
  
 
 0.516
Meso_2237
PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I.
  
 
 0.516
Meso_2253
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.516
Meso_2603
PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein.
 
     0.512
Meso_1070
KEGG: bur:Bcep18194_A4907 hypothetical protein.
  
    0.481
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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