Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_1056PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein. (328 aa)    
Predicted Functional Partners:
Meso_1055
KEGG: eba:p2A115 hypothetical protein, potential permease subunit.
       0.773
Meso_1057
PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.705
Meso_1058
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bbr:BB1050 putative dehydrogenase.
       0.645
Meso_2603
PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein.
  
     0.487
Meso_1070
KEGG: bur:Bcep18194_A4907 hypothetical protein.
  
     0.469
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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